The detailed information of tRNA gene sequence


Sequence ID>WENV170721193
Genome IDLSQX01182305
Search identical group
Phylum/Class[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
Species
Start position on genome 21989
End posion on genome 22086
Amino Acid SeC(p)
Anticodon TCA
Upstream region at tRNA start position 
ttctcggcgg
tRNA gene sequence 
GGAGGCGAATGTGTCCCGGTGGGCGCCCTGGACTTCAAATCCAGTGGGGGGCAGTATAGG
CTGTCTCCGGTGGGTTCGATTCCCACACGCCTCCGCCA
Downstream region at tRNA end position 
gctgacatcc
Secondary structure (Cloverleaf model)
>WENV170721193	SeC(p)	TCA
                   g      GCCA gctgacatcc
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     C - G
                     G - C
                     A   A          T T
                    A     C A C C C     A
      C C C        T      | | | | |     G
    G       T G T G       G T G G G     C
    G       + | + |                 T T
    T       G C G C
      G G          C     TGGGGGGCAGTATAGGCTGTCTCCG
                    C - G
                    T - A
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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