The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0784
Genome IDAY596297
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula marismortui ATCC 43049 [AY596297, AY596298]
Start position on genome 2046290
End posion on genome 2046216
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ccattctgaa
tRNA gene sequence 
GGGCCCTTAGCTTAGTCTGGTTAAAGCGATCGGCTCATAACCGATTGAGCGCTGGTTCAA
ATCCGGCAGGGCCCAtcc
Downstream region at tRNA end position 
agtttctgcc
Secondary structure (Cloverleaf model)
>At0784	Met	CAT
                   a      Atcc agtttctgcc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     T - A          T A
                    T     C G G C C     A
    C T G A        A      | | + | |     A
  T         T T C G       G C T G G     C
  G         | | | |                 T T
  G         A A G C
    T T A          G     TGAGC
                    A - T
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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