The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0794
Genome IDAE004437
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalobacterium salinarum NRC-1; ATCC 700922 [AE004437]
Start position on genome 115314
End posion on genome 115422
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
catcgccagc
tRNA gene sequence 
GGGCCCTTAGCTTAGTCCGGTTCAAAGCCCCCGGCTCATAACCGGGTGAGCGGTGGTTCA
AATCCGCCAGGGCCCAtcc
Downstream region at tRNA end position 
atttcctcga
Secondary structure (Cloverleaf model)
>At0794	Met	CAT
                   c      Atcc atttcctcga
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     T - A          T A
                    T     C C G C C     A
    C T G A        A      | | + | |     A
  C         T T C G       G G T G G     C
  G         | | | |                 T T
  G         A A G C
    T T C A        C     TGAGC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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