The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1153
Genome IDBX950229
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis S2 [BX950229]
Start position on genome 1601263
End posion on genome 1601189
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
gaccgggtac
tRNA gene sequence 
GGGCCCGTAGCTCAGGCTGGTTAGAGTGCTCGGCTCATAACCGAGTGGTCATGGGTTCAA
ATCCCATCGGGCCCAtat
Downstream region at tRNA end position 
atttgaaaca
Secondary structure (Cloverleaf model)
>At1153	Met	CAT
                   c      Atat atttgaaaca
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     T A C C C     A
    C G G A        A      | | | | |     A
  T         C T C G       A T G G G     C
  G         | | | +                 T T
  G         G A G T
    T T A          G     TGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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