The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1507
Genome IDAE008384
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina mazei Go1 [AE008384]
Start position on genome 856272
End posion on genome 856346
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
agaacaaaga
tRNA gene sequence 
GGGCCTGTAGCTCAGTCAGGTTAGAGCGCTCGGCTCATAACCGAGCGGTCACCGGTTCAA
ATCCGGTCAGGCCCAtaa
Downstream region at tRNA end position 
aacccataaa
Secondary structure (Cloverleaf model)
>At1507	Met	CAT
                   a      Ataa aacccataaa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     T - A
                     G - C          T A
                    T     T G G C C     A
    C T G A        A      | | | | |     A
  A         C T C G       A C C G G     C
  G         | | | |                 T T
  G         G A G C
    T T A          G     CGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb. tRNA-Met(Ile) whose CAU anticodon is enzymatically converted to read AUA codons.

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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