The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0625
Genome IDAE000782
Search identical group
Phylum/ClassEuryarchaeota
SpeciesArchaeoglobus fulgidus DSM 4304 [AE000782]
Start position on genome 117636
End posion on genome 117562
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
agtgttctga
tRNA gene sequence 
AGCGGGGTGGGGTAGTCAGGTGATCCCGGCGGGCTCATAACCCGCAGATCCGTGGTTCAA
ATCCACGCCCCGCTAttt
Downstream region at tRNA end position 
gcccagcccc
Secondary structure (Cloverleaf model)
>At0625	Met	CAT
                   a      Attt gcccagcccc
                     A - T
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G C A C C     A
    C T G A        G      | | | | |     A
  A         T G G G       C G T G G     C
  G           | | |                 T T
  G         T C C C
    T G A          G     AGATC
                    G - C
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(initiator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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