The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1052
Genome IDCP000609
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis C5 [CP000609]
Start position on genome 1197999
End posion on genome 1198077
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ttgtatttga
tRNA gene sequence 
AGCGAGGTAGGGTAGCCAGGCCTATCCCGCCGGGCTCATAACCCGGAGATCAGAAGTTCA
AATCTTCTCCTCGCTACCA
Downstream region at tRNA end position 
tttttttaaa
Secondary structure (Cloverleaf model)
>At1052	Met	CAT
                   a      ACCA tttttttaaa
                     A - T
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     T C T T C     A
    C C G A        A      | | | | |     A
  A         T G G G       A G A A G     C
  G           | | |                 T T
  G         T C C C
    C C T A        G     AGATC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(initiator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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