The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1117
Genome IDCP000745
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus maripaludis [CP000745]
Start position on genome 1346892
End posion on genome 1346814
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
gtgtaattga
tRNA gene sequence 
AGCGAGGTAGGGTAGCCAGGCCTATCCCGCCGGGCTCATAACCCGGAGATCAGAAGTTCA
AATCTTCTCCTCGCTACCA
Downstream region at tRNA end position 
ttttttaatt
Secondary structure (Cloverleaf model)
>At1117	Met	CAT
                   a      ACCA ttttttaatt
                     A - T
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     T C T T C     A
    C C G A        A      | | | | |     A
  A         T G G G       A G A A G     C
  G           | | |                 T T
  G         T C C C
    C C T A        G     AGATC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(initiator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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