The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1191
Genome IDCP000742
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus vannielii SB [CP000742]
Start position on genome 1403505
End posion on genome 1403430
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
aatttattga
tRNA gene sequence 
AGCGAGGTAGGGTAGCCAGGCCTATCCCGCCGGGCTCATAACCCGGAGACCAGAAGTTCA
AATCTTCTCCTCGCTAttt
Downstream region at tRNA end position 
ttttgtaaaa
Secondary structure (Cloverleaf model)
>At1191	Met	CAT
                   a      Attt ttttgtaaaa
                     A - T
                     G - C
                     C - G
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     T C T T C     A
    C C G A        A      | | | | |     A
  A         T G G G       A G A A G     C
  G           | | |                 T T
  G         T C C C
    C C T A        G     AGACC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(initiator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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