The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0591
Genome IDCP000505
Search identical group
Phylum/ClassThermoproteota
SpeciesThermofilum pendens Hrk 5 [CP000505]
Start position on genome 361817
End posion on genome 361739
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
gggttacgaa
tRNA gene sequence 
GCCGGGGTCGCCTAGCCTGGTCAAGGGCGCCGGACTCATAATCCGGTCTTCCCGGGTTCG
AATCCCGGCCCCGGCACCA
Downstream region at tRNA end position 
cggtattagt
Secondary structure (Cloverleaf model)
>At0591	Met	CAT
                   a      ACCA cggtattagt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        C      | | | | |     G
  T         T C C G       C C G G G     C
  G         + | | |                 T T
  G         G G G C
    T C A A        G     TCTTC
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)

	
	
Intron

	
	
Final decision¡û

	
CommentsThe tRNA gene was obtained from SPLITSdb.  tRNA-Met(elongator).

	
	
Genome/Seq. Info.[Ensembl]


                
SPLITSdb[SPLITSdb]

        






        



	
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