The detailed information of tRNA gene sequence


Sequence ID>CL171800013
Genome IDCP006915
Search identical group
Phylum/ClassUnclassified
SpeciesCandidatus Saccharibacteria bacterium RAAC3_TM7_1 [CP006915]
Start position on genome 240092
End posion on genome 239783
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
ttaacggtat
tRNA gene sequence 
TCCGGCGTAGCTCAGTGGTAGAGCGGGTCGCTGTCAACGATTAGGTCGCTGGTTCGAATC
CAGCCGCCGGAGCCA
Downstream region at tRNA end position 
agagcataat
Secondary structure (Cloverleaf model)
>CL171800013	Asp	GTC
                   t      GCCA agagcataat
                     T - A
                     C - G
                     C - G
                     G - C
                     G - C
                     C - G
                     G - C          T A
                    T     C G A C C     A
        G A        A      | | | | |     G
      T     C T C G       G C T G G     C
      G     | | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    G + T
                    G + T
                    T - A
                    C - G
                    G - C
                  C       A
                  T       A *
                    G T C
intron: position=38, length=235 (in A-loop)
TAGGCAGCCTTCTTGGGTAACCAAGTACGGAAACACAGGGTGAATTGCGGGAAATCTAAGTCCACCTAAG
GTGGATATGACAATCCGCAGCCAAGCCAAGATTGGGATAAAGGATCTTGGAAGGTTCAGAGACTAGAGTG
TGAGCCCAACAATACTCCCTCACAAGCGCCCTGCTCCATCTTTTTGATGGATGATGAGATAGTCCACGCA
TCCTCGAAAGAGATGATCACGTGTA
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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