The detailed information of tRNA gene sequence


Sequence ID>CL171800017
Genome IDCP011214
Search identical group
Phylum/ClassUnclassified
SpeciesCandidatus Woesebacteria bacterium GW2011_GWF1_31_35 [CP011214]
Start position on genome 698633
End posion on genome 698903
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
tttattatgt
tRNA gene sequence 
GGGGTCGTAGCTCAATTGGTTAGAGCGCTTCCCTGTCACGGAAGAGGTTGCGAGTTCGAG
TCTCGTCGATCCCGCtc
Downstream region at tRNA end position 
cagactttag
Secondary structure (Cloverleaf model)
>CL171800017	Asp	GTC
                   t      GCtc cagactttag
                     G - C
                     G - C
                     G - C
                     G + T
                     T - A
                     C - G
                     G - C          T G
                    T     T G C T C     A
      T A A        A      + | | | |     G
    T       C T C G       G C G A G     C
    G       | | | |                 T T
    G       G A G C
      T T A        G     AGGTT
                    C - G
                    T - A
                    T - A
                    C - G
                    C - G
                  C       C
                  T       A *
                    G T C
intron: position=38, length=196 (in A-loop)
ATAGAGGCAGCTTTTTAAAGTAATTTAAATTGAAAAACTAGGCTAATTCGGGGAAACCTTTAAAATGGTA
ATCCCGAGCTAAATCAATGTTTTAACAAACGTTGTAAATGTGTAGAGACTATATACCTAGCTCCTGGAAT
TTTTTCCAGGATGATAAGATAGTCCGAACCTCGCGGAAACGCTTGGAATTATTGCA
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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