The detailed information of tRNA gene sequence


Sequence ID>CL170100028
Genome IDCP002371
Search identical group
Phylum/ClassAlphaproteobacteria
SpeciesCandidatus Liberibacter solanacearum CLso-ZC1 [CP002371]
Start position on genome 8943
End posion on genome 9250
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
aaaaaaaatt
tRNA gene sequence 
GTGGATGTGGCGGAATAGGTAGACGCAGCAGACTTAAAATCTGCTTCTTTGCATGAGAGT
GCGGGTTCGAGTCCCGCCATCCGCACCA
Downstream region at tRNA end position 
agctgaaaaa
Secondary structure (Cloverleaf model)
>CL170100028	Leu	TAA
                   t      ACCA agctgaaaaa
                     G - C
                     T + G
                     G - C
                     G - C
                     A - T
                     T - A
                     G - C          T G
                    T     C G C C C     A
      T A A        G      | | | | |     G
    A       G G C G       G C G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        A     TTCTTTGCATGAGAGT
                    G - C
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=220 (in A-loop)
AATGTTATTGGGTGCCCATAGAGAAATCGATGGAGTAGAACTGCTCAAATTCGGGGAAAGCTTTTGCAAA
GCTAATCCCGAGCCAAATCTTGTTATTCAAGAGAGGTGTAGAGACTGGACGGGCAGCACCTAAGGCATTT
AAAACGTTATGGTGAAGGGACAGTCCAGACCACAAACACTGCAAACAAAAAGCGGTGGCAATGAAAATTG
TAGTGGTAAG
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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