The detailed information of tRNA gene sequence


Sequence ID>CL170100029
Genome IDCP002395
Search identical group
Phylum/ClassAlphaproteobacteria
SpeciesAsticcacaulis excentricus CB 48 [CP002395, CP002396]
Start position on genome 1615876
End posion on genome 1615579
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
ctcggtttaa
tRNA gene sequence 
GCGGGCATGGCGGAATCGGTAGACGCAACGGACTTAAAATCCGTCGGCCGAAAGGCCATG
CCGGTTCGAGTCCGGCTGCCCGCACCA
Downstream region at tRNA end position 
caaacatcct
Secondary structure (Cloverleaf model)
>CL170100029	Leu	TAA
                   a      ACCA caaacatcct
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     C - G
                     A - T          T G
                    T     C G G C C     A
      T A A        G      | | | | |     G
    C       G G C G       G C C G G     C
    G         | | |                 T T
    G       A C G C
      T A G        A     CGGCCGAAAGGCCAT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=211 (in A-loop)
AAACCAAAGGATTGAGTGCCTTCGGGGAAACCCGGAGAGTAGAACTGCTCAAATTCGGGGAAGCCTTCGC
TGGTAATCCCGAGCCAAGCCGGTCGAAAGATCGGAAGGTGTAGAGACTAGACGGGCAGCACCTAACCCCG
CTCAGGGCATGGTGAAGGGATAGTCCAGACCACGAACGCGCAAGGGCGGCGGCGAAAGCCGAAGTGGTAA
G
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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