The detailed information of tRNA gene sequence


Sequence ID>CL170100035
Genome IDCP002831
Search identical group
Phylum/ClassBacteroidota
SpeciesSaprospira grandis str. Lewin [CP002831]
Start position on genome 1655096
End posion on genome 1654668
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
aagttctttt
tRNA gene sequence 
GCCCGGATGGTGAAATCGGTAGACACGCAGGACTTAAAATCCTGTTGACAGTAATGTCAG
TGCGGGTTCGAGCCCCGCTCCGGGCACCA
Downstream region at tRNA end position 
aaaaaaagga
Secondary structure (Cloverleaf model)
>CL170100035	Leu	TAA
                   t      ACCA aaaaaaagga
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     A - T          C G
                    T     C G C C C     A
      T A A        G      | | | | |     G
    C       A G T G       G C G G G     C
    G         | | |                 T T
    G       A C A C
      T A G        G     TTGACAGTAATGTCAGT
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=340 (in A-loop)
AGTCTACTTTTTTATGTTTTTAATGATTAAAAGTGCAGTTTTGGGAGTAAACTCCAGTTTATTGATTGCA
CAACTTCTTAAAGAGGTTTCATATAAAAAGTAGGATTCTGAGCGCTAATCGAGAAATTGATTTTTGCATA
CACTCTCAAATTCAGGGAAATCTTAACAGGTAATGCTGATGACAATCCTGAGCTAAGTTGCAAACTTTGT
TTTGCAAAAAGTGCAGAGACTTTACGGGAGTGGCCTAAGTTTATTATTAAGATAATGAATAGGGTTGAGA
GAAAGTCCAGACCACAAACTTTTATCCCAATAAAAGGCAGTGAAAGCTGTAGCTGGTAAG
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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