The detailed information of tRNA gene sequence


Sequence ID>CL170100037
Genome IDCP002859
Search identical group
Phylum/ClassBacteroidota
SpeciesRunella slithyformis DSM 19594 [CP002859]
Start position on genome 4600279
End posion on genome 4601105
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
atcaccaccc
tRNA gene sequence 
GCCGGGGTGGTGGAACTGGTAGACACGCAGGACTTAAAATCCTGTGAGCCGAAACGCTCG
TACGGGTTCGATTCCCGTCCCCGGTACCA
Downstream region at tRNA end position 
aagcctaaaa
Secondary structure (Cloverleaf model)
>CL170100037	Leu	TAA
                   c      ACCA aagcctaaaa
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T T
                    T     T G C C C     A
      C A A        G      | | | | |     G
    T       G G T G       A C G G G     C
    G         | | |                 T T
    G       A C A C
      T A G        G     TGAGCCGAAACGCTCGT
                    C - G
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=738 (in A-loop)
AGTTCATTGATTTTTTGACGATTTTCTAAATTTGTAGCCTATTTAAACATGGCTCGCTATCAATTTGACC
CAATTTTTGAAGAGCATTTTGTTAGTGTCTGTAATCAATCAGACAGTATGGCCCAAGCGGCTGTATCACT
CGGAATGAATTATAAAACACTATGCTTTCATGCAAAAAGATTGGATTGTTTTAGGTCAAATCAATCCGGT
AAAGGCTTTCTTAAAAAGCCTTCGAAACAACCAGTCCCATTAGAATTGATTTTTAATGGAAGCTATTCGA
CTTATCAATCATACAAATTGAAAAAGAGATTATTGAAAGAAGGTTACAAGTTACATCAATGCGAAAATTG
TGGTTTAGATCAATGGTTTGGGAAACCTATTCCATTAGAATTACATCACATTGATGGTAACAGGCTTAAT
AACACTCTGGGAAATTTGAGTTTATTGTGTCCTAATTGTCACGCATTTACGGAGAATTATCGTGCGAAAA
ACATCAAAAATTTGAGTGCACAGACGGAAACGTTTGATGTAGAATCGCTTAAAATCGGGGAAGTCTTCAC
AGTAATGTATGATAATCCCGAGCCAAGTCCCGAAATTGTTGGGAAAGGTGTAGAGACTTAACAGGCGAAA
TCTAAGTTCCGAAGCAAATTCGGGATAAGATTAAGAGAAAGTCCAGACCACAAATTCCAAGCCGATTCAT
ATCGGACTATGGAAGCGACGAAAGTCGTAGGAGGTACG
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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