The detailed information of tRNA gene sequence


Sequence ID>CL170100042
Genome IDCP003552
Search identical group
Phylum/ClassCyanobacteriota
SpeciesNostoc sp. PCC 7524 [CP003552]
Start position on genome 1858824
End posion on genome 1858463
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
aagacaatgg
tRNA gene sequence 
GGGGGTGTGGCGGAATGGCAGACGCTACGGACTTAAAATCCGTTGACCTTAAACGGTCGT
GAGGGTTCAAGTCCCTCCACCCCCAtaa
Downstream region at tRNA end position 
acatttaaaa
Secondary structure (Cloverleaf model)
>CL170100042	Leu	TAA
                   g      Ataa acatttaaaa
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     G - C          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    G       G G C G       G A G G G     C
    G         | | |                 T T
    C       A C G C
      A G          T     TGACCTTAAACGGTCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=277 (in A-loop)
AAGTAATTGAGCCTTAAAGAAGAAATTCTTTAAGTGGCAGCTCTCAAACTCAGGGAAACCTAAATCTGTT
CACAGACAAGGCAATCCTGAGCCAAGCCGAAAGAGTCATGAGTGCTGAGTAGTGAGTAAAATAAAAGCTC
ACAACTCAGAGGTTGTAACTCTAAGCTAGTCGGAAGGTGCAGAGACTCGACGGGAGCTACCCTAACGTAA
AGTCGAGGGTAAAGGGAGAGTCCAATTCTCAAAGCCTATTGGCAGTAGCGAAAGCTGCGGGAGAATG
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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