The detailed information of tRNA gene sequence


Sequence ID>CL170100043
Genome IDCP003558
Search identical group
Phylum/ClassCyanobacteriota
SpeciesSynechococcus sp. PCC 6312 [CP003558]
Start position on genome 2450243
End posion on genome 2450569
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
gcttacttaa
tRNA gene sequence 
GGGGGCGTGGCGGAATGGTAGACGCTGCGGACTTAAAATCCGTTGACCTTATAAGTCGTG
AGGGTTCAAGTCCCTCCGCCCCCAtaa
Downstream region at tRNA end position 
atcaataatc
Secondary structure (Cloverleaf model)
>CL170100043	Leu	TAA
                   a      Ataa atcaataatc
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    G       G G C G       G A G G G     C
    G         | | |                 T T
    T       A C G C
      A G          T     TGACCTTATAAGTCGT
                    G + T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=243 (in A-loop)
AAGAAATTTGAGCCTTAGTGGGGAAACTTGCTAAGTGAATGCTCTCAAATTCAGGGAAACCTAAGTCTGA
TGCATATTTTAGGCATTTGAGATAGGGCAATCCTGAGCCAAGCCGTTTTTCATCACGGGAGCGGAAGGTG
CAGAGACTCGACGGGAGCTACCCAACCATGATTCGTCAAAGGGGGTAAAGAGAGAGTCCAATTCTCAACA
CTTGCGGGTGGCTGTGAAAGCAGCAGGAGAATG
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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