The detailed information of tRNA gene sequence


Sequence ID>CL170100058
Genome IDCP004021
Search identical group
Phylum/ClassAlphaproteobacteria
SpeciesCandidatus Liberibacter africanus PTSAPSY [CP004021]
Start position on genome 784007
End posion on genome 783699
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
ggttaatatt
tRNA gene sequence 
GTGGATGTGGCGGAATCGGTAGACGCAGCAGACTTAAAATCTGCTTCTTTATATGAGAGT
GCGGGTTCGAGTCCCGCCATCCGCACCA
Downstream region at tRNA end position 
ggtttattag
Secondary structure (Cloverleaf model)
>CL170100058	Leu	TAA
                   t      ACCA ggtttattag
                     G - C
                     T + G
                     G - C
                     G - C
                     A - T
                     T - A
                     G - C          T G
                    T     C G C C C     A
      T A A        G      | | | | |     G
    C       G G C G       G C G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        A     TTCTTTATATGAGAGT
                    G - C
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=221 (in A-loop)
AATTTATTGAGTGCCCATAGAGAAATCTGTGGAGTAGAACTGCTCAAATTCGGGGAAAGCTCTTAGCAAG
CCAATCCCGAGCCAAACCTTTTTTTTTAAAAGGAAGGTGTAGAGACTGGACGGGCAGCACCTAAAACATT
TATAATGTTATGGTGAAGGGACAGTCCAGACCACAAACACTGCGAATAAAAAGCAGTGGCAATGAAAATT
GCAGTGGTAAG
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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