The detailed information of tRNA gene sequence


Sequence ID>CL170100079
Genome IDCP006604
Search identical group
Phylum/ClassAlphaproteobacteria
SpeciesCandidatus Liberibacter americanus str. Sao Paulo [CP006604]
Start position on genome 1126416
End posion on genome 1126721
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
gataaaatgt
tRNA gene sequence 
GTGGATGTGGCGGAATAGGTAGACGCAGTAGACTTAAAATCTGCTTCTTTATGTGAGAGT
GCGGGTTCGAGTCCCGCCATCCGCACCA
Downstream region at tRNA end position 
tttgacaaac
Secondary structure (Cloverleaf model)
>CL170100079	Leu	TAA
                   t      ACCA tttgacaaac
                     G - C
                     T + G
                     G - C
                     G - C
                     A - T
                     T - A
                     G - C          T G
                    T     C G C C C     A
      T A A        G      | | | | |     G
    A       G G C G       G C G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        A     TTCTTTATGTGAGAGT
                    G - C
                    T + G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=218 (in A-loop)
ATGTTATTGGGTGCCCATGGAAAAATCCATGGAGTAGAACTGCTCAAATTCGGGGAAGGCTATTTTTTTG
CTAATCCCGAGCCAAACCTTTGGTTAAAAAAAGTCAAAGGAAGGTGTAGAGACTGGACGGGCAGCATCTA
AGACGTGAACAGTTATGATGAAGGGACAGTCCAGACCACAAACACAAACGTAGTGGCAACGAAAGTTGTA
GTGGTAAG
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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