The detailed information of tRNA gene sequence


Sequence ID>CL170100085
Genome IDCP007158
Search identical group
Phylum/ClassBetaproteobacteria
SpeciesBordetella holmesii H558 [CP007158]
Start position on genome 141646
End posion on genome 141953
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
tgcgcactct
tRNA gene sequence 
GCCCGAGTGGTGAAATCGGTAGACACAAGGGACTTAAAATCCCTCGCCGCAAGGCGTGCC
GGTTCGATTCCGGCCTCGGGCACCA
Downstream region at tRNA end position 
attctctgcc
Secondary structure (Cloverleaf model)
>CL170100085	Leu	TAA
                   t      ACCA attctctgcc
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C          T T
                    T     C G G C C     A
      T A A        G      | | | | |     G
    C       A G T G       G C C G G     C
    G         | | |                 T T
    G       A C A C
      T A G        A     CGCCGCAAGGCGT
                    A - T
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=223 (in A-loop)
GAACAATTTGAGCCCTCCGGAGGAAACTCCAGAGGTGAAGCCCGTCAAATTCGGCGAACGCCCTGGATGC
CCCGGCATCCGAGCCAACGCCGAGCCAAGCCCAGGCCCCGGCCCGGGAAGGTGTAGAGAGCAGACGGCGG
GCACCTAAGGCTGCAAGGCTAAGGTGAAGGCGTGCTCCAGACCACCAACAGCGCGCGCTGGCGGCGAAAG
CCGAAGTGGTAAG
Intron
Comment/Decision
Genome/Seq. Info.-

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