The detailed information of tRNA gene sequence


Sequence ID>CL170100087
Genome IDCP007203
Search identical group
Phylum/ClassCyanobacteriota
SpeciesNodularia spumigena CCY9414 [CP007203]
Start position on genome 1275644
End posion on genome 1275306
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
caatcaatat
tRNA gene sequence 
GGGGGTGTGGCGGAATGGTAGACGCTACGGACTTAAAATCCGTTGACCATAATAGGTCGT
GTGGGTTCAAGTCCCTCCACCCCCACta
Downstream region at tRNA end position 
aaaattgaag
Secondary structure (Cloverleaf model)
>CL170100087	Leu	TAA
                   t      ACta aaaattgaag
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     G - C          T G
                    T     C T C C C     A
      T A A        G      |   | | |     A
    G       G G C G       G T G G G     C
    G         | | |                 T T
    T       A C G C
      A G          T     TGACCATAATAGGTCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=253 (in A-loop)
AGAAAACTGAGCCTTGATCGAGAAATCTTTCAAGTGGAAGCTCTCAAATTCAGGGAAACCTAAATCTGTT
TACAGATATGGCAATCCTGAGCCAAGCCGAAACAAGTCCTGAGTGTTAAAGCTCATAACTCATCGGAAGG
TGCAGAGACTCGACGGGAGCTACCCTAACGTTAAGCCGAGGGTAAAGGGAGAGTCCAATTCTCAAAGCCG
AAGGTTATTAAAACCTGGCAGCAGTGAAAGCTGCGGGAGAATG
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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