The detailed information of tRNA gene sequence


Sequence ID>CL170100089
Genome IDCP007440
Search identical group
Phylum/ClassAlphaproteobacteria
SpeciesRhodoplanes sp. Z2-YC6860 [CP007440]
Start position on genome 4979224
End posion on genome 4978888
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
atcggcattc
tRNA gene sequence 
GCGGGCGTGGCGAAATTGGTAGACGCAAGGGACTTAAAATCCCTAGGCTCGAAAGAGCTG
TGCCGGTTCAAGTCCGGCCGCCCGCACCA
Downstream region at tRNA end position 
aatcaccgcg
Secondary structure (Cloverleaf model)
>CL170100089	Leu	TAA
                   c      ACCA aatcaccgcg
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C          T G
                    T     C G G C C     A
      T A A        G      | | | | |     A
    T       A G C G       G C C G G     C
    G         | | |                 T T
    G       A C G C
      T A G        A     AGGCTCGAAAGAGCTGT
                    A - T
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=248 (in A-loop)
GAAGACTTGAGTGCTCCCGGGGAAACCCTGGATGCAGAACTGCTCAAACTCGGGGAAACCGGTGACAGGC
AATCCCGAGCCAAGCATGCCAGCCGAACGATTGTCGCGCGGCCGGCATGAAGGTGTAGAGACTAGACGGG
CAGCACCTAAAGCGCGCGAGTGCGTCACGGTGAAGGTATAGTCCAGACCCCAAACAGGGCTTCGGCTGAA
CATGCCAAGCCCAGGCGGCGAAAGCCGTAGCGGGTACG
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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