The detailed information of tRNA gene sequence


Sequence ID>CL170100158
Genome IDCP011271
Search identical group
Phylum/ClassPlanctomycetota
SpeciesGemmata sp. SH-PL17 [CP011271]
Start position on genome 2358449
End posion on genome 2358776
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
gccccgttct
tRNA gene sequence 
GGGTGAGTGGTGGAATGGCAGACACAGGGGACTTAAAATCCCCCGTTCCGTGAGGAACAT
GCGGGTTCGAGTCCCGCCTCACCCACtg
Downstream region at tRNA end position 
aaactagata
Secondary structure (Cloverleaf model)
>CL170100158	Leu	TAA
                   t      ACtg aaactagata
                     G - C
                     G - C
                     G - C
                     T - A
                     G - C
                     A - T
                     G - C          T G
                    T     C G C C C     A
      T A A        G      | | | | |     G
    G       G G T G       G C G G G     C
    G         | | |                 T T
    C       A C A C
      A G          A     CGTTCCGTGAGGAACAT
                    G - C
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=242 (in A-loop)
AAACAGAAATTGAGCCACGGGAGGGGAAACCGCCCGTGGGATGCTGTCAAATTCGGTGAAGCCCCTGCCC
CGGCGAGGTAACACCGAGCTAAGTTTGTTCTTCACACGTGTCGCGCCCCATTGGTACGCGAAGAACAAGA
AAGTGTAGAGACTAGACGGCAGCGACCTACGGCGGGCGCCCACGGTCAAGGTATAGTCCAGACCACAAAC
CCAAACGGGGCGGCGAAAGCCGAAGTGGTACG
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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