The detailed information of tRNA gene sequence


Sequence ID>CL170100174
Genome IDCP012897
Search identical group
Phylum/ClassAlphaproteobacteria
SpeciesBrevundimonas sp. DS20 [CP012897]
Start position on genome 3078600
End posion on genome 3078303
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
gcctcggctc
tRNA gene sequence 
GCGGGCGTGGCGAAACTGGTAGACGCAACGGACTTAAAATCCGTCGGGCTTTGCCCATGC
CGGTTCGACCCCGGCCGCCCGCACCA
Downstream region at tRNA end position 
acccgaattc
Secondary structure (Cloverleaf model)
>CL170100174	Leu	TAA
                   c      ACCA acccgaattc
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C          C C
                    T     C G G C C     A
      C A A        G      | | | | |     G
    T       A G C G       G C C G G     C
    G         | | |                 T T
    G       A C G C
      T A G        A     CGGGCTTTGCCCAT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=212 (in A-loop)
AAGCTGAGGATTGAGTGCGCCGGGGGAAATCCCGGACGTAGAACCGCTCAAAGTCGGGGAACCCTGTCAG
ATGGCGATCCCGAGCCAAGCCCGTCCCCCTTGGACGGGAAGGTGTAGAGACTAGACGGGCGGCGCCTAAG
GCTTCGGCTACGGCGAAGGGATAGTCCAGACCACGAACGCCATCCGGCGGCGGCGAAAGTCGAAGTGGTA
TG
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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