The detailed information of tRNA gene sequence


Sequence ID>CL170100187
Genome IDCP013923
Search identical group
Phylum/ClassBetaproteobacteria
SpeciesAchromobacter denitrificans USDA-ARS-USMARC-56712 [CP013923]
Start position on genome 1325220
End posion on genome 1324908
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
gaaccccaat
tRNA gene sequence 
GCCCGAGTGGTGAAATTGGTAGACACAAGGGACTTAAAATCCCTCGGCCGCAAGGCCGTA
CCGGTTCGATTCCGGTCTCGGGCACCA
Downstream region at tRNA end position 
ttgccctttt
Secondary structure (Cloverleaf model)
>CL170100187	Leu	TAA
                   t      ACCA ttgccctttt
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     A - T
                     G - C          T T
                    T     T G G C C     A
      T A A        G      | | | | |     G
    T       A G T G       A C C G G     C
    G         | | |                 T T
    G       A C A C
      T A G        A     CGGCCGCAAGGCCGT
                    A - T
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=226 (in A-loop)
GAATCCATTTGAGCCCTCCGGAGGAAACTCCAGAGGTGTAGCCCGTCAAACTCGGCGAATGCCCTGGACT
TGTTCCGAGCCAACGCCGAGCCAAGCCCGGATCGAAAGAACCGGGAAGGTGTAGAGAGCAGACGGCGGGC
ACCTAAGGCCGCAAGGCTATGGTGAAGGCGTGCTCCAGACCACGAACGGCGCTCCGCGCGCCGGCGGCGA
AAGCCGAAGTGGTACG
Intron
Comment/Decision
Genome/Seq. Info.-

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