The detailed information of tRNA gene sequence


Sequence ID>CL171300030
Genome IDCP010424
Search identical group
Phylum/ClassUnclassified
Speciesarchaeon GW2011_AR10 [CP010424]
Start position on genome 394362
End posion on genome 394181
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
ggcttaagtt
tRNA gene sequence 
GCGGGGGTGGCGGAGTGGTCTAACGCGGCAGCCTGCTAAGCTGTTACTCGAAAGGGTGCA
CGAGTTCAAATCTCGTCCCCCGCGtct
Downstream region at tRNA end position 
tgcccttttt
Secondary structure (Cloverleaf model)
>CL171300030	Ser	GCT
                   t      Gtct tgcccttttt
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T G C T C     A
      T G A        G      | | | | |     A
    G       G G C G       A C G A G     C
    G         | | |                 T T
    T       A C G C
      C T A        G     TACTCGAAAGGGTGC
                    G + T
                    C - G
                    A - T
                    G - C
                    C - G
                  C       A
                  T       A *
                    G C T
intron: position=38, length=98 (in A-loop)
AGCCGGTTCCGTCCGGCTGTGACGGAATACGTCGAGGGTTCTCATTTCATTCGAACCCTCATAAATATGA
AATAAAAAAATAATTTTGGTTTGCAGCA
Intron
Comment/Decision
Genome/Seq. Info.-

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