The detailed information of tRNA gene sequence


Sequence ID>CL171300031
Genome IDCP010424
Search identical group
Phylum/ClassUnclassified
Speciesarchaeon GW2011_AR10 [CP010424]
Start position on genome 394363
End posion on genome 392653
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
ggcttaagtT
tRNA gene sequence 
GCGGGGGTGGCGGAGTGGTCTAACGCGGCAGCCTGCTAAATTGCAAGCGGATCTTTCCGC
TTCACGAGTTCAAATCTCGTCCCCCGCGTgt
Downstream region at tRNA end position 
ttattttttg
Secondary structure (Cloverleaf model)
>CL171300031	Ser	GCT
                   T      GTgt ttattttttg
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     T G C T C     A
      T G A        G      | | | | |     A
    G       G G C G       A C G A G     C
    G         | | |                 T T
    T       A C G C
      C T A        G     AAGCGGATCTTTCCGCTTC
                    G - C
                    C - G
                    A - T
                    G + T
                    C   A
                  C       A *
                  T       A
                    G C T
intron: position=39, length=1621 (in A-loop)
GCCGGTTCCGTCCGGCTGTGACGGAATACGTCGAGGGTTCTCATTTCATTCGAACCCTCATAAATATGAA
ATAAAAAAATAATTTTGGTTTGCAGCAAGCTGTTACTCGAAAGGGTGCACGAGTTCAAATCTCGTCCCCC
GCGTCTTGCCCTTTTTTTGGCGGGCATTTGCCGCGTCGGATTTCGTAACTTTGTTACGTTCCCCGCGTGA
GTTAAAAAGTGTAAATCTGTGTGATGTTTAAATATTGGAAAAGCACAAAAATTTAGTATACAAGTTCAAA
TGGAGTTTTTTTTTGATGAGAAAAGTTTTTTTGAATTTTTTGCCAACTCTTTCAAAACTTGACTTTACAA
ACTTTATTGTCTATTATTTTTGGATAATTTTATCATTACCCGATCTTGTTTTGGACCCAAGATTTTTAGC
CGGGACTTTACTTTTTTTGTTTTACCTTTGGAAGTTTATTTTAAAAGGAAACAGCAGTATTGAGTCAAAA
AAATATTTGTATGCTTTCTCTCAAATCCCCGTCTTAGCAGCATTAATGGCTCAACTTGAATCAGGACTTT
TTTCTTTCAGTTCAAATACTTTATTTCAAAATTTCACTGTGATTTATACATTAAGCATCATAGCGACAGT
AATTATTATAGTGGCAGTTGCAGAGCTGAAAGGAAAACCATTTACAGACAAAGAGTTGTTTGAAGAAAGA
ATCAGTGAAAAGTCGTATTCCAAAAAAACCTATTTGATTGGAGCCATACTTACTACACTATTGTTCTGGG
TTTTAATTGGCCTCCAATTGATTCCAAACCCAATTGCTGGCTTTGCTTTTGTATTTGCAGTGGATAAAAT
TGCAACGGCAACAGAACTAAAAAATTGGACGCAATTCAAAAAATAAATATTGCCCATTCAAATTTTGTTG
AGGTATTTTTCCAAGTCCGTGTAATTTTTGTTTCTATCAAGCAGGCACGCCAGAATAATGTTTGGTTCAA
AAACAACATAAATTAGTCGCATTTCTTTGCCTTGCAGATTCAACCTTATCCGAAATACTTTTCGGAAGCG
CTTTGAGTGGATTTTTTTGAAGTGAAATGGGTTTTCTTCTATAATCTTTATTTTTTCTGATATGATTTTT
TTGGATTTTTCGTCGAGTTTGTTTAATTGCTCTACCATTACAGGAGAAAGCTTTACTGTGAAAGTCATTC
AAATTCCTTAAAGTATTCTTTTGCATCAACAAGCTTTCCGCTTTTAACAGTTTTCTCAATAATCTTGTCA
ATTAATTCTATTTCTTTGTCTGAAAATGACTCGTCAAATGCGCTTTTTTCAAAAATCTTTTCTCTCAATG
AGTCGGCCGCAAGTTCCTGCACGTTTTTGTAACCGTAGCTTTGTGCAAAAGACTTTGCAGAAGAATAAAG
GTTATCCGAAATCTTTAGATTAATCTGCTTAGTAACCATAGATATCAATAGGAACCTAAAGCTATTTAAA
CTTAATTGCCCAAAATTGCTTAATAGGCTTTGGATAAACGCTATTTGAAAATAGCAGGTGATTTGATGGA
AGAATTTTTTTTGCGCAAAAATAACCAAGTCAAAAGTAAAAATTTGTTTTTAAGTGGGCTCGAGCGGAGC
GAGACCCACTG
Intron
Comment/Decision
Genome/Seq. Info.-

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