The detailed information of tRNA gene sequence


Sequence ID>CL170500013
Genome IDCP002573
Search identical group
Phylum/ClassAcidithiobacillia
SpeciesAcidithiobacillus caldus SM-1 [CP002573]
Start position on genome 2279820
End posion on genome 2279511
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
gtcaagccac
tRNA gene sequence 
GGAGGTGTGGCAGAGTGGTTGAATGCACCGGTCTTGAGAACCGGCAGGGGTTCACGCCCC
TCGTGAGTTCGAATCTCACCGCCTCCGCCA
Downstream region at tRNA end position 
tacacaggcg
Secondary structure (Cloverleaf model)
>CL170500013	Ser	TGA
                   c      GCCA tacacaggcg
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     T + G
                     G - C          T A
                    T     C A C T C     A
      T G A        G      | | | | |     G
    G       G A C G       G T G A G     C
    G         | | |                 T T
    T       A T G C
      T G A        A     CAGGGGTTCACGCCCCTC
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       G *
                    T G A
intron: position=38, length=220 (in A-loop)
GCATCGAGCCCACCACGGGAAACCATGGTGGTGACAGGAATCAAATTCGGCGAAGCCCCTGGGCTATAGT
CCCGAGGTAATGCCGAGCCAAGCTGGAGCAATCCAGAAGGTGTAGAGATCAGACGGTTCCCACCTAAGGC
CCCAGCGGGCTAGGGTGAAGGCATGATCCAGACTCCAAAGACCCAAAGGGTTGGTGGCGAAAGCCATAGT
GGGTACGGAA
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK