The detailed information of tRNA gene sequence


Sequence ID>CHL090800040
Genome IDAM711640
Search identical group
Phylum/ClassViridiplantae
SpeciesCuscuta reflexa
Start position on genome 55334
End posion on genome 55970
Amino Acid Stop
Anticodon TTA
Upstream region at tRNA start position 
agcactaagg
tRNA gene sequence 
GGGGCTATAGCTCAGTTGGTAGAGCACCTCGTTTTAAGTAGTTTGATCTGTTTTACCGAG
AAGGTCTACGGTTCGAGTCCGTATAGCCCTtaac
Downstream region at tRNA end position 
ttctagttaa
Secondary structure (Cloverleaf model)
>CHL090800040	Stop	TTA
                   g      taac ttctagttaa
                     G + T
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T          T G
                    T     A T G C C     A
      T G A        A      | | | | |     G
    T       C T C G       T A C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          A     TGATCTGTTTTACCGAGAAGGTC
                    C   T
                    C   T
                    T + G
                    C   A
                    G + T
                  T       G
                  T       A
                    T*T A
intron: position=35, length=546 (in A-loop)
ACACGCGCGCCAATGTTGTTCGGGGAAGTCCATTTTAAAATGATATAATAAAGGGATCTTTTTTTTAGTT
ATGTCTTACTCCATAACTTTGAGGGAACCATAGCCGGACAAAGGAACTGTGTCCGATTTAGTTGGGTGGG
CACCCATTTAGGTGCCAAACAGACTCCAGGAGATATTGATAGGGTGAATTGCTAGCCTCTTCAATGTTAG
GCCTAATGAAATGAGGATAAGGACCTCAAAAAAATATCTTTTCCATTATCTGAACTTTAAGGTGTATCAA
GTTTCATATTTGATTTTGAAAGGGTAGAGACTTCATTTCACTTAGGATGATCTAGACCATAGGCAGACCT
ACGTCAAGATAACCCCCCCGCTCTTGAAATGAAACACTTCGGTAGTGCTCCCGGATCATAATCTCAAAAA
ATGAATCGGAGCACAAGGAGCCCTTTCTTTTTCTTATTTTTCTTTCAAGAAAAAAGATGGGAGACTTAGG
AAAAAAATGCGGGTTGGGTCTTTGAAATAGTTCAGATCATTTTGATATTTTAGAAT
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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