The detailed information of tRNA gene sequence


Sequence ID>PL191000053
Genome IDCP000489
Search identical group
Phylum/ClassAlphaproteobacteria
SpeciesParacoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
Start position on genome 2841628
End posion on genome 2841533
Amino Acid Sec
Anticodon TCA
Upstream region at tRNA start position 
tcggggatag
tRNA gene sequence 
GGAAGAGAAGCGTCCCCGGTGGGGCGGCCGGACTTCAAATCCGGTTGGGGCAGTGAGCCT
GTCCCGGGTGGGTTCGACTCCCACTCTCTTCCGCCA
Downstream region at tRNA end position 
gatgcgacga
Secondary structure (Cloverleaf model)
>PL191000053	Sec	TCA
                   g      GCCA gatgcgacga
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T C
                    A     C A C C C     A
      C C C        G      | | | | |     G
    G       C T G C       G T G G G     C
    G       | + | |                 T T
    T       G G C G
      G G          G     TTGGGGCAGTGAGCCTGTCCCGG
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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