The detailed information of tRNA gene sequence


Sequence ID>PL191000803
Genome IDCP030127
Search identical group
Phylum/ClassAlphaproteobacteria
SpeciesIndioceanicola profundi SCSIO 08040 plasmid:unnamed1 (CP030127)
Start position on genome 318269
End posion on genome 318361
Amino Acid Sec
Anticodon TCA
Upstream region at tRNA start position 
atggggcggt
tRNA gene sequence 
GGAGGCGATCGGGGTCTGGTGGCCCTCCCGGTCTTCAAAACCGGTGGCCCGTTTAGCGCG
GGTGGTGGGTTCGATTCCCATCCGCCTCCGCCA
Downstream region at tRNA end position 
tccccgccag
Secondary structure (Cloverleaf model)
>PL191000803	Sec	TCA
                   t      GCCA tccccgccag
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     C - G
                     G - C
                     A   C          T T
                    T     T A C C C     A
      T C T        C      + | | | |     G
    G       G G G G       G T G G G     C
    G       | | | +                 T T
    T       C C C T
      G G          C     TGGCCCGTTTAGCGCGGGTG
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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