The detailed information of tRNA gene sequence


Sequence ID>CHL1810000409
Genome IDAP011960
Search identical group
Phylum/ClassStramenopiles
SpeciesFistulifera solaris JPCC DA0580 (AP011960)
Start position on genome 10918
End posion on genome 10832
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ttccatattT
tRNA gene sequence 
GCATTCGTGGCCGAGTGGTTGAAGGCACCGGACTCATAATCCGTTTTCCAATGGAACGTC
ACTGGTTCGAACCCAGTCGAATGCATac
Downstream region at tRNA end position 
ttaaaaacaa
Secondary structure (Cloverleaf model)
>CHL1810000409	Met	CAT
                   T      ATac ttaaaaacaa
                     G - C
                     C - G
                     A - T
                     T - A
                     T - A
                     C - G
                     G - C          C A
                    T     T G A C C     A
      T G A        G      | | | | |     G
    G       G C C G       A C T G G     C
    G         | | |                 T T
    T       A G G C
      T G A        A     TTTCCAATGGAACGTC
                    C   T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    C A T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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