The detailed information of tRNA gene sequence


Sequence ID>CHL1861000166
Genome IDFM957154
Search identical group
Phylum/ClassStramenopiles
SpeciesFucus vesiculosus (FM957154)
Start position on genome 48416
End posion on genome 48114
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
acaattatag
tRNA gene sequence 
GGGAGCGTGGCGGAATGGTAGACGCAACGGACTTAAAATCCGTTGATATTTATAATCGTG
AGGGTTTAAGTCCCTCCGCTCCCAatt
Downstream region at tRNA end position 
gtaaaaatta
Secondary structure (Cloverleaf model)
>CHL1861000166	Leu	TAA
                   g      Aatt gtaaaaatta
                     G - C
                     G - C
                     G - C
                     A - T
                     G - C
                     C - G
                     G - C          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    G       G G C G       G A G G G     T
    G         | | |                 T T
    T       A C G C
      A G          A     TGATATTTATAATCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    T A A
intron: position=38, length=219 (in A-loop)
ATTTTGAGCATCAAATCAGAAATATGATTTAATAAGTAAGTTCTCAAATTCAAGGAAATCTAAGTTATTT
ATAATATGATAACCCTGAGCCAATAAATAAGTTTTACGGTGCAGAGACTCGATGGGAACTACCTTAATTG
GTAAAGAGAGAGTCCAATTTCAAAGACTATTTTATTTTTCAAATTTCATAGTAATGATGAAAATCAAATA
GAAATGAAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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