The detailed information of tRNA gene sequence


Sequence ID>CHL1861000545
Genome IDJQ405663
Search identical group
Phylum/ClassStramenopiles
SpeciesSaccharina japonica (JQ405663)
Start position on genome 48927
End posion on genome 48613
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
tgttgtaact
tRNA gene sequence 
GGGGGTGTGGCGGAATGGTAGACGCAACGGACTTAAAATCCGTTGATGCAAATCGTGAGG
GTTCAAGTCCCTCCACCCCCAaat
Downstream region at tRNA end position 
aaaaactatt
Secondary structure (Cloverleaf model)
>CHL1861000545	Leu	TAA
                   t      Aaat aaaaactatt
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     G - C          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    G       G G C G       G A G G G     C
    G         | | |                 T T
    T       A C G C
      A G          A     TGATGCAAATCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    T A A
intron: position=38, length=234 (in A-loop)
ACTTTGAGCATCAAGTCATTAACGTGATTAGCCAAGTAAGTTCTCAAATTCAAGGAAATCTAAGTCATAA
TTATGATAAGACAATCTTGAGCCAAGGATTAATATAGTTAATTATTAATCAAGGTGCAGAGACTCGACGG
GAACTACCTTAATTGGTAAAGATAGAGTCCAATTTTGAAAAAAAAAATGTATCTATACTTTTTTATTATT
GATGAAAATCATATCGAAATGAAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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