The detailed information of tRNA gene sequence


Sequence ID>CHL1861000688
Genome IDKC117177
Search identical group
Phylum/ClassViridiplantae
SpeciesEquisetum hyemale (KC117177)
Start position on genome 58990
End posion on genome 59334
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
actatttcaa
tRNA gene sequence 
GGGGGTATGGCGAAATGGTAGACGCTACGGACTTAATATCCGTTGGTTTTTTAGAACTGT
GAGGGTTCAAATCCCTCTACCCCCAccc
Downstream region at tRNA end position 
taattttcta
Secondary structure (Cloverleaf model)
>CHL1861000688	Leu	TAA
                   a      Accc taattttcta
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     A - T          T A
                    T     C T C C C     A
      T A A        G      | | | | |     A
    G       A G C G       G A G G G     C
    G         | | |                 T T
    T       A C G C
      A G          T     TGGTTTTTTAGAACTGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       T *
                    T A A
intron: position=38, length=260 (in A-loop)
AAGATTGAGCGTCAGTATGGTAACTTACTGAATGACAGCTTTCAAATTCAGGGAAACCTAGGCCTTTTGA
TAGACAATCCTGAGCCAAATTCGATTTAGAATAGGTGCAGAGACTCAATGGAAGCTATTCGAACAAGGAT
TCAAAATATTGAATGAAAATATTTTTCAACTCTTCAATATAATTGAAAAGTTAGAATAAAGATAGAGTCC
TATTTTATATTGTTTTTATTAACAACAATGCAAATTGTGATAGAAAGAAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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