The detailed information of tRNA gene sequence


Sequence ID>CHL1861000773
Genome IDKC306742
Search identical group
Phylum/ClassViridiplantae
SpeciesPodocarpus totara (KC306742)
Start position on genome 31506
End posion on genome 30985
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
ttccgagaac
tRNA gene sequence 
GGGGATATGGCGGAATTGGTAGACGCTACGGACTTGATATCCGTCGGTTTTTTTAGACCT
TGAGGGTTCAAGTCCCTCTATTCCCAggt
Downstream region at tRNA end position 
tcatttccaa
Secondary structure (Cloverleaf model)
>CHL1861000773	Ser	TGA
                   c      Aggt tcatttccaa
                     G - C
                     G - C
                     G - C
                     G + T
                     A - T
                     T - A
                     A - T          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    T       G G C G       G A G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        T     CGGTTTTTTTAGACCTT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       T *
                    T G A
intron: position=38, length=436 (in A-loop)
CGAATTGAGCCTTGGTATGGAAACGTACTAAGTGATAGCTTCCAAATCCAGGGAACCCTTGGATATATAT
ATTTTGAATGGGCAATCCTGAGCCAAATCTGGTTTCTAGGAATAAAAGTTTTCCTCCTAGAGAGGGATAG
GTGCAGAGACTCGATGGAAGTTTTTCTAACGAATCAAAATCATTTGATCCAATATTTTTTCTATATAAAA
TTCTATTTATTTATGCTTAAATAAATAGAAGTGATTAATACCATCAATCACTCAAAACTCAATCAATCGA
AACTTAGTTAACTATTAACTAAAATAAATTTAGGAACTTCTCTAGAAAGAGAAGCCCACTCAGTTTTTGG
AATGAATGATTGGACGAGAATAAAGATAGAGTCCAATTCTACATGTCAATGCCAGTAACAACAATGTAAA
TTGCAGTAGAAAGAAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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