The detailed information of tRNA gene sequence


Sequence ID>CHL1861000832
Genome IDKC598087
Search identical group
Phylum/ClassStramenopiles
SpeciesNannochloropsis oculata CCMP525 (KC598087)
Start position on genome 34464
End posion on genome 34732
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
ttatatttta
tRNA gene sequence 
GGGGGCGTGGTGGAATGGTAGACACAACGGACTTAAAATCCGTTGACTATTACAGTCGTG
GGGGTTCAAGTCCCCCCGCCCCCAatt
Downstream region at tRNA end position 
aaacttaatt
Secondary structure (Cloverleaf model)
>CHL1861000832	Leu	TAA
                   a      Aatt aaacttaatt
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C          T G
                    T     C C C C C     A
      T A A        G      | | | | |     A
    G       G G T G       G G G G G     C
    G         | | |                 T T
    T       A C A C
      A G          A     TGACTATTACAGTCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    T A A
intron: position=38, length=185 (in A-loop)
TTTTGAGCATTAATTTGTAAGTTCTCAAATTCAGAAAAAGTCTTTTCTAAAAATTGGAAAGAACAATCCT
GAGCCAACTCATGAAAATGAAAAGGTGCAGAGACTCAATGGGAACTACCTTTAAGGTAAAGAGAGAGTCC
ATACTTTTATTACAAAATCAAAATGACGTGTACATAAAGTAGAAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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