The detailed information of tRNA gene sequence


Sequence ID>CHL1861000834
Genome IDKC598089
Search identical group
Phylum/ClassStramenopiles
SpeciesNannochloropsis limnetica CCMP505 (KC598089)
Start position on genome 34533
End posion on genome 34802
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
tataaaacaa
tRNA gene sequence 
GGGGGCGTGGTGGAATGGTAGACACAACGGACTTAAAATCCGTTGACTATTACAGTCGTG
GGGGTTCAAGTCCCCCCGCCCCCAatt
Downstream region at tRNA end position 
aaatttatca
Secondary structure (Cloverleaf model)
>CHL1861000834	Leu	TAA
                   a      Aatt aaatttatca
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C          T G
                    T     C C C C C     A
      T A A        G      | | | | |     A
    G       G G T G       G G G G G     C
    G         | | |                 T T
    T       A C A C
      A G          A     TGACTATTACAGTCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    T A A
intron: position=38, length=186 (in A-loop)
TTTTGAGCATTAATTTGTAAGTTCTCAAATTCAGAAAAAGTCTTTCCTAAAAATTGGAGAGAACAATCCT
GAGCCAACTCATGAAAATGAAAAGGTGCAGAGACTCAATGGGAACTACCTCTAAGGTAAAGATAGAGTCC
ATACTTGTATACGAAATATGAAAATAACGTATATATAAAGTAGAAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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