The detailed information of tRNA gene sequence


Sequence ID>CHL1861000835
Genome IDKC598090
Search identical group
Phylum/ClassStramenopiles
SpeciesNannochloropsis oceanica CCMP531 (KC598090)
Start position on genome 34462
End posion on genome 34729
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
gatagcacaa
tRNA gene sequence 
GGGGGCGTGGTGGAATGGTAGACACAACGGACTTAAAATCCGTTGACTATTACAGTCGTG
GGGGTTCAAGTCCCCCCGCCCCCAatt
Downstream region at tRNA end position 
aaacttaatt
Secondary structure (Cloverleaf model)
>CHL1861000835	Leu	TAA
                   a      Aatt aaacttaatt
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C          T G
                    T     C C C C C     A
      T A A        G      | | | | |     A
    G       G G T G       G G G G G     C
    G         | | |                 T T
    T       A C A C
      A G          A     TGACTATTACAGTCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    T A A
intron: position=38, length=184 (in A-loop)
TTTTGAGCATTAATTTGTAAGTTCTCAAATTCAGAAAAAGTCTTTTCTAAAAATTAGAGAGAACAATCCT
GAGCCAACTCATGAAAATGAAAAGGTGCAGAGACTCAATGGGAACTACCTGTGAGGTAAAGATAGAGTCC
ATACTTTTATACAAAACGAGAGTACTTTGTAGACAAAGTAGAAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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