The detailed information of tRNA gene sequence


Sequence ID>CHL1861001336
Genome IDKM016695
Search identical group
Phylum/ClassViridiplantae
SpeciesMesembryanthemum crystallinum (KM016695)
Start position on genome 48433
End posion on genome 48883
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
aaaacaaaag
tRNA gene sequence 
GGGGATATGGCGAAATCGGTAGACGCTACGGACTTAATATCCGTCGACTTTAAAAATCGT
GAGGGTTCAAGTCCCTCTATCCCCAaaa
Downstream region at tRNA end position 
gtttatttca
Secondary structure (Cloverleaf model)
>CHL1861001336	Leu	TAA
                   g      Aaaa gtttatttca
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    C       A G C G       G A G G G     C
    G         | | |                 T T
    G       A C G C
      T A G        T     CGACTTTAAAAATCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       T *
                    T A A
intron: position=38, length=366 (in A-loop)
AGGCTTGAGCCTTAGTATGGAAACCTACTAAGTGAAAACTTTCAAATTCAGAGAAACCCTGGAATTAATA
AAAATGGGCAATCCTGAGCCAACTCCTTTTTTTCAAAAGAAAAAAATAAGGGTTCAGAAAGCAAGAAAAA
AGGATAGGTGCAGAGACTCAAAGGAAGCTATTCTAACAAATGGGGTTGACTGTGTTGTTATAAGAATTCT
TCCAAGTTGAAAAAAGAATCAAATATTCATTCATCAAATCATTCACTCCATAGTCTGATAAATCTTTTGA
AGAACTGATTAATCGGACGAGAATGAAGATAGAGTCCCGTTCTACATGTCAATACTGACAACAATGAAAT
TTATAGTAAGAGGAAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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