The detailed information of tRNA gene sequence


Sequence ID>CHL1861001908
Genome IDKT199250
Search identical group
Phylum/ClassViridiplantae
SpeciesKirchneriella aperta SAG 2004 (KT199250)
Start position on genome 49036
End posion on genome 49517
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
taaaaaaata
tRNA gene sequence 
GGGGATATGGCGGAATGGTAGACGCAACGGACTTAAAATCCGTTGATTTTTTCGATCGTG
AGGGTTCAAGTCCCTCTATCCCCAgaa
Downstream region at tRNA end position 
gtgagattct
Secondary structure (Cloverleaf model)
>CHL1861001908	Leu	TAA
                   a      Agaa gtgagattct
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    G       G G C G       G A G G G     C
    G         | | |                 T T
    T       A C G C
      A G          A     TGATTTTTTCGATCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    T A A
intron: position=38, length=398 (in A-loop)
TGTTTTCTACAGAACAGTTATTTTCAAATTGAGCCTTTCTTTAGTGATAAAGAAAGTGAAAACTCTCAAA
ATCAGAAAAAAGGGCAAAAGATAAATTCAAGTTGCTTATTCTTGGTTGCGAAGTACTTCGCAACCAAGAA
TAAGCAACTTGAATTTATCTTAAACCAATTATTCTGAGCCAATTTAACAAACAAATCATTAGGTTGCTTA
TACTTCGCAACCAATGGGGCAACCAACTTGTATTTTTGCGGTGCAAAGCACGAGAAAAAGTTGCTCATAC
TTCGCAACTAAAGGGAACGCACAAGCAAGGGAACTAAAGGTTAATTAGGTGCAGAGACTAAACGAGAGTT
CTCTAAAAACTTCTTTAGAGGAAGATATAGTCCAAAAAAATTTTGAAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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