The detailed information of tRNA gene sequence


Sequence ID>CHL1861002774
Genome IDKU847995
Search identical group
Phylum/ClassViridiplantae
SpeciesPectinodesmus pectinatus (KU847995)
Start position on genome 39313
End posion on genome 39620
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
ttttaaaaaa
tRNA gene sequence 
GGGGATATGGCGGAATGGTAGACGCTACGGACTTGAAATCCGTTGATCTTTTCGATCGTG
AGGGTTCAAGTCCCTCTATCCCCAaaa
Downstream region at tRNA end position 
aaagaaagag
Secondary structure (Cloverleaf model)
>CHL1861002774	Ser	TGA
                   a      Aaaa aaagaaagag
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    G       G G C G       G A G G G     C
    G         | | |                 T T
    T       A C G C
      A G          T     TGATCTTTTCGATCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    T G A
intron: position=38, length=224 (in A-loop)
GAGTTTAAAAAAATAATTTTTTGAGCTTTTCTAAAGTAATTTAGAAACTGACTGCTTTCAAAATCAGAGA
AAGGGCGTTTCTTCTTCAAAAAAAAAACGAAGAACTCTCAAACTCTGAACCTAAATTGACAAGCTTTAAA
GCTAAAAGAAAAGGGTGCAGAGACTTTATGAAAGCTATCTTTTAAAAAAGATAATGACAAAGTCCAATAA
AAAATTCAATGAAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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