The detailed information of tRNA gene sequence


Sequence ID>CHL1861006217
Genome IDMG739457
Search identical group
Phylum/ClassViridiplantae
SpeciesAllium prattii (MG739457)
Start position on genome 47363
End posion on genome 47682
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
tgtctaaaaa
tRNA gene sequence 
GGGGATATGGCGAAATTGGAGTAGACGCTACGGACTTGATATCCGTCGATTTTAGAAATC
GTGAGGGTTCGAGTCCCTCTATCCCCAata
Downstream region at tRNA end position 
aagagagttc
Secondary structure (Cloverleaf model)
>CHL1861006217	Ser	TGA
                   a      Aata aagagagttc
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     C T C C C     A
    T T A A        G      | | | | |     G
  G         A G C G       G A G G G     C
  G           | | |                 T T
  A         A C G C
    G T A G        T     CGATTTTAGAAATCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       T *
                    T G A
intron: position=38, length=233 (in A-loop)
TGGATTGAGCCTTAGTATGGAAACCTGCTAAGTGAAAACTTCCAAATTCAGAGAAACCCTGGAACTAAAA
ATGGGCAATCCTGAGCCAAATCTTTATTTTTTGAAAAACAAACAAGGGTTTCAAAAAGAGAATAAAAAAG
GATAGGTGCAGAGACTCAATGGAAGCTGTTCTAACGAATGGAGTTGACTACGTTGCGTTGGTAACAATCC
CATTTTTCTATAACAAGAGGAAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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