The detailed information of tRNA gene sequence


Sequence ID>CHL1899200013
Genome IDKJ461680
Search identical group
Phylum/ClassViridiplantae
SpeciesKlebsormidium flaccidum (KJ461680)
Start position on genome 161875
End posion on genome 161158
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
ctattgattg
tRNA gene sequence 
GGGGGTATAGCTCAGTTGGTAGAGCGCTGCCCTTGCATGGCAGATGTCAGCGGTTCGAGC
CCGCTTACCTCCAtat
Downstream region at tRNA end position 
cttttgtgtg
Secondary structure (Cloverleaf model)
>CHL1899200013	Cys	GCA
                   g      Atat cttttgtgtg
                     G - C
                     G - C
                     G + T
                     G - C
                     G - C
                     T - A
                     A - T          C G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     ATGTC
                    C - G
                    T - A
                    G - C
                    C - G
                    C - G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=645 (in A-loop)
ATGGTGCCGTACGAATGACTCCCTTATAGGAGTCTTAGCTTTTCTACGCGGATTCAGCCAAATGAAGAAG
TGAGCTTCATACCCAACGCCTTACCTCCCTTCCAAGTAGACGGGATGGGGACTATCACATGGCGTGTACC
TGTTTCCAGCAAAGCCCCTTGGTAAAAAGAATTTGATGAAGCAGGTGGAAGAATGATGGGAGGTCAAGAA
TATTCTGTGTGAGTCGCAGGTTCAAAGATGCTAGTGAGGCCAGGCAGGCCTTTCCAAAATGGAAATTATG
GATGGGGGGTGGGCGGCCCCACACCTGTGCAAGCGGGGCGGTATACCCATTCCCTGAGTAAGCATCTAGG
CTCGTCACGGAGGCTTGTTCCCCCACCTTGCTCCGCGTAGCAAAGGACAACGGGATTGCCTAAAGGGGCT
ATCTTTGCCCTATGGTTTCAGAGGGGCCACCCTAGAGAGAACGCGTGCGGCACCAAGCTGTGCGTATTTT
TGAGAGAAGGCCTTGAGGTTGGTATAGGGTAGACTGTAGTTTGCTCAATGCCTTCCAAAGAGCCCACCAT
GGCACGAGCTGTCCGGTGTGTTCGGGGGGGGACGTATGGATTATTCTGGCTATTAGGGCAGATAAACGAT
GCACACGTTTCCTCA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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