The detailed information of tRNA gene sequence


Sequence ID>CHL1899100901
Genome IDJF343520
Search identical group
Phylum/ClassViridiplantae
SpeciesMankyua chejuensis (JF343520)
Start position on genome 109681
End posion on genome 110665
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
catgcaccgc
tRNA gene sequence 
GGGCTATTAGCTCAGTTGGTAGAGCGCGCCCCTGATACGGGCGAGGTCTCTGGTTCAAAT
CCAGGATAGCCCAgct
Downstream region at tRNA end position 
gcgccagggg
Secondary structure (Cloverleaf model)
>CHL1899100901	Ile	GAT
                   c      Agct gcgccagggg
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     A - T
                     T - A          T A
                    T     G G A C C     A
      T G A        A      + | | | |     A
    T       C T C G       T C T G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGTC
                    C - G
                    G - C
                    C - G
                    C - G
                    C - G
                  C       C
                  T       A *
                    G A T
intron: position=38, length=912 (in A-loop)
ATTGCGTCGTTGCGCTTGGGCTGTGAAGGCTCCCAGCCACATGGATAGTTCAATGTGCTCATCAGCGCCT
GACCTGAAGATGCGGATCATCCAAGGAACGTTAGCATGGCGTATTCCTCCTGTTTCAATTAGGTACTTAG
ACCAAACTACTCTTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCTATGGGGATTCAACTCTCTGTT
CACTCGTGGGATCTGGGCGGTCCGGGGAGGACCAGTCTCGATGGCTCCTCCCTTCTCGAGAATCCATACA
TCCCTTATCAGTGTATGGGTTGGCTATCTTCTGAGCACAGGTTGAAGTTCAGCCTAAATGTGAAGAATGG
AGCACCTAATAACGCATCTCCACAGACCAAGAACTACGAGATCACCCTTCTATTATGGGGGTGATGGAGG
GATCATACCATTCGAGCCTTCTTTCGCTTCTCTTGGAGGTCCGGAAGAAGCAGCAATCAATATTCTCCCT
CCGGAGGGAACCTGAAGGAAGCCAAATTCCTCTCCGAAGGGCCCGGGAGATTGGACCTAGCCATAATAAG
AATGCTTGGTTCCTCGGTATTCGACCCTCCCGGGCACCACGAACGGCCTCCGGATCGATGCAATGTGATG
TCTTTATCTATCTCCCAACGGCGGAGGCGGGTTCGAAAAAGGATCTTAGAGTGTCCAGGGTTGGGCCAGG
AGGGTCTCTTAACGCCTTCTTTTCTCTTCCCATCGAATTCCTTCTCCAAGTACTTGCCATTGGCAAGAAA
GGAGGAGGAAAAACAAGCACACTTGGAGAGCGCAGTGCAACGGAAAGTTGTATGCTGCGTTCGGGAAGGA
TGAATCGCTCCTAAGAAACTATTGATTCTCCATCCCAATGGGATAATGTTATGGGTGCGATGATTTACTT
CA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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