The detailed information of tRNA gene sequence


Sequence ID>CHL1899100542
Genome IDHE963749
Search identical group
Phylum/ClassViridiplantae
SpeciesTrithuria inconspicua (HE963749)
Start position on genome 103492
End posion on genome 104354
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
ctccgctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCATGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAgct
Downstream region at tRNA end position 
cgtgatctta
Secondary structure (Cloverleaf model)
>CHL1899100542	Ala	TGC
                   g      Agct cgtgatctta
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=790 (in A-loop)
ATTGGGTCGTTGCGATTACGGGTTGGCTGTCTAATTGTCCAGGCGGTAATGATAGTATCTTGTACCTGAA
CCGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGAC
AAAGAAGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGTTCGTACAT
GGACGATAGTTGGAGTCGGCGGCTCTCCTAGGGTTACCTCATCTGGGATCCCCGGGGAAGAGGATCAAGT
TGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGATCCAAATGTGGCAAAAGGAAGGA
AAATCCATGGACCGGCCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCTTTCGGC
ATCCAGGGGTCACGGACCGACCATATACCCTGTTCACCAAGTGGAACGCATTAGCGGTCCGCTCTCTGGT
TGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACGAGCATTCTTAAGACCAAAGAGTCGG
GCGGAAAAAGGGGGGAGCTACCCGTTCCTGGTTCTCCTGTAGCTGGCCGGAAGCACAAGAATCCTTAGAA
TGGGATTCCAACCCAGCGCCTTTTGTTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTACGATGAAAGTT
GTAAGCTGTGTTCGGGGGGGAATTATTGTCTATCGTTGGACTCTATGGTAGAATCAGTCGGGGAGGCCTG
AGAGGCGGTGGTTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK