The detailed information of tRNA gene sequence


Sequence ID>CHL1899101156
Genome IDJN867580
Search identical group
Phylum/ClassViridiplantae
SpeciesMagnolia officinalis subsp. biloba (JN867580)
Start position on genome 107770
End posion on genome 108642
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cttggctcgg
tRNA gene sequence 
GGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCATGGCGGATGTCAGCGGTTCGAGT
CCGCTTATCTCCAgcn
Downstream region at tRNA end position 
nnnnnnnnna
Secondary structure (Cloverleaf model)
>CHL1899101156	Ala	TGC
                   g      Agcn nnnnnnnnna
                     G - C
                     G - C
                     G + T
                     G - C
                     A - T
                     T - A
                     A - T          T G
                    T     T C G C C     A
      T G A        A      | | | | |     G
    T       C T C G       A G C G G     C
    G       | | | |                 T T
    G       G A G C
      T A          T     ATGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T + G
                  C       T
                  T       A *
                    T G C
intron: position=38, length=800 (in A-loop)
ATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGGCGGTAATGATAGTATCTTGTACCTGAA
CCGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGAC
AAAGATGGGCTGTCAAGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATCGTACAT
GGACGATAGTTGGAGTCGGCGGCTCTCCTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGT
TGGCCCTTGCGAACAGCTTGATGCACTATCCCCCTTCAACCCTTTGAGCGAAATGTGGCAAAAGGAAGGA
AAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGC
ATCCAGGGGTCACAGACCGACCATAGACCCTGTTCAATAAGTGGAACGCATTAGCTGTCCGCTCTCCGGT
TGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGCATTCTTAAGACCAAAGAGTCGG
GCGGAAAAAGGGGAAGAGCTCTCCGTTCCTGGTTCTCCTGTAGCTGGATCCTCCGGAACCACAAGAATCC
TTAGAATGGGATTCCAACTCAGCACCTTTTGAGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTACG
ATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGGTTATTGTCTATCGTTGGCCTCTATGGTAGAATCAGTCG
GGGAGGCCCGAGAGGCGGTGGTTTACCCTG
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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