The detailed information of tRNA gene sequence


Sequence ID>CHL1861000690
Genome IDKC117178
Search identical group
Phylum/ClassViridiplantae
SpeciesOphioglossum californicum (KC117178)
Start position on genome 63423
End posion on genome 63820
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
gacaaggatt
tRNA gene sequence 
GGGGGTATGGCGAAATGGTAGACGCTACGGACTTAAGATCCGTTGGTCCCTGCTGCAAAC
CGTGAGGGTTCAAATCCCTCTATCCCCAttt
Downstream region at tRNA end position 
actaaaaaat
Secondary structure (Cloverleaf model)
>CHL1861000690	Leu	TAA
                   t      Attt actaaaaaat
                     G - C
                     G - C
                     G - C
                     G - C
                     G + T
                     T - A
                     A - T          T A
                    T     C T C C C     A
      T A A        G      | | | | |     A
    G       A G C G       G A G G G     C
    G         | | |                 T T
    T       A C G C
      A G          T     TGGTCCCTGCTGCAAACCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    T A A
intron: position=38, length=310 (in A-loop)
TAGATTGAGCTTCAGTTTGGAAACTTACTGAATGACAGCTTTCAAATTCAGGGAAACCTGGGACTTTATG
GACAGGCAATCCTGAGCCAAATCTTGTTCTTAGGATGAGATAGGTGCAGAGACTCGATGGAAGCTATTCC
AAGACTGACTCGGACGAGATACTTAGTATCTTAATATTGTACCGACTGGTCAGAGAAATGAAGGAGTTAT
CTTTGACGGTACTTTCTCGTCAATGAGTAGCAAGAATAAAGATAGAGTCCATCTCCACACTGTTAGTGTT
GACAGCAATGCGAATTGTGGTAGAAAGAAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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