The detailed information of tRNA gene sequence


Sequence ID>CHL1861001720
Genome IDKP881334
Search identical group
Phylum/ClassStramenopiles
SpeciesSargassum horneri (KP881334)
Start position on genome 48020
End posion on genome 47728
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
atagagatat
tRNA gene sequence 
GGGAGCGTGGCGGAATGGTAGACGCAACGGACTTAGAATCCGTTGATATTTTTAATCGTG
AGGGTTCAAGTCCCTCCGCTCCCAcgc
Downstream region at tRNA end position 
aaaaaataat
Secondary structure (Cloverleaf model)
>CHL1861001720	Leu	TAG
                   t      Acgc aaaaaataat
                     G - C
                     G - C
                     G - C
                     A - T
                     G - C
                     C - G
                     G - C          T G
                    T     C T C C C     A
      T A A        G      | | | | |     A
    G       G G C G       G A G G G     C
    G         | | |                 T T
    T       A C G C
      A G          A     TGATATTTTTAATCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    T A G
intron: position=38, length=209 (in A-loop)
AGTTTGAGCATAACGTCAGAAACCTGGTGTCTTTAGTAAGTTCTCAAATTCAAGGAACTCTAAGTCTTGA
TGATATGATAACCTTGAGCCAATAAATAATTTTTAAGGTGCAGAGACTCGACGGGAACTACCATAAATGG
TAAAGAAAGAGTCCAATTTCTAACTTTCTACAGTAATATAATAGTGATGAAAATCATTTAGAAATGAAA
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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